Bioinformatics Packages on Ivy Linux VM

Available Packages

The following bioinformatics packages are available on the Ivy Linux Virtual Machines


Bowtie2 is a memory-efficient tool for aligning short sequences to long reference genomes.

For bowtie2 usage information, please click [here] (/userinfo/ivy/ivy-linux-sw/bioinformatics/bowtie2)


HISAT2 is a fast and sensitive tool for aligning short reads against the general human population
(as well as single reference genome)

* Requires approval before installation

For HISAT2 usage information, please click here